===========
deli.decode
===========

DELi's decoding module is responsible for decoding raw DNA sequences (reads) from DEL selections into.
It has several modules that support this effort.

``runner``
----------
.. automodule:: deli.decode.runner
   :members:
   :undoc-members:
   :show-inheritance:

``bb_calling``
--------------
.. automodule:: deli.decode.bb_calling
   :members:
   :undoc-members:
   :show-inheritance:

``lib_calling``
---------------
.. automodule:: deli.decode.lib_calling
   :members:
   :undoc-members:
   :show-inheritance:

``demultiplex``
---------------
.. automodule:: deli.decode.demultiplex
   :members:
   :undoc-members:
   :show-inheritance:

``decoder``
-----------
.. automodule:: deli.decode.decoder
   :members:
   :undoc-members:
   :show-inheritance:

``umi``
-------
.. automodule:: deli.decode.umi
   :members:
   :undoc-members:
   :show-inheritance:

``degen``
---------
.. automodule:: deli.decode.degen
   :members:
   :undoc-members:
   :show-inheritance:

``report``
----------
.. automodule:: deli.decode.report
   :members:
   :undoc-members:
   :show-inheritance:

``calls``
---------
.. automodule:: deli.decode.calls
   :members:
   :undoc-members:
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